The secrets of life lie in the molecular flexibility.

Welcome to Prof. Mariusz Jaremko's research group, the

Flexible Systems Lab!

Our research group works mainly on metabolites which are important for human health, and our current main focus in this discipline is oriented towards food, food safety, food quality, and food fraud by utilizing state-of-the-art instrumentation in metabolomics studies. We are also working on aggregation of amylin, a biological peptide that is connected tightly with diabetes II, a disease that is closely related to unhealthy diets. So, food science and the consequences of the food we eat are one of the main areas which the group Flexible Systems investigates. We are also working to develop methods and pulse programs in Nuclear Magnetic Resonance (NMR) that allow us to uncover obscured metabolites and to detect them at lower concentrations, in order to understand metabolic pathways better. 


Why the name Flexible Systems?

It's simple; because metabolites, as well as amylin and its analogues, are very flexible systems i.e. amylin does not have a defined 3D structure, and in the case of the small molecules and metabolites we study, while they do have defined structures, they often exhibit very high levels of dynamic flexibility due to their size.

Latest Publications

Chapter 4 - A new frontier in cancer therapy: The intersection of cancer vaccines and metabolomics

by Farah Ayman Sukareh, Ruba Al-Nemi, Peter Karagiannis, Hiba Asfour, Amita Verma, Mariusz Jaremko, Abdul-Hamid Emwas
Book Chapter Year: 2024 DOI: https://doi.org/10.1016/B978-0-443-15526-0.00009-3

Abstract

Surgery, chemotherapy, and radiation are standard cancer therapies to remove or kill cancer cells. These therapies can successfully treat cancer in its early stages but are typically less effective at advanced stages or recurrence. The past few decades have led to a fourth therapy, cancer immunotherapy. Among the immunotherapy approaches for tumors is cancer vaccination. Cancer vaccines can stimulate immunity against tumors through tumor antigens. Ideal cancer vaccines stimulate both cellular and humoral immunity while overcoming tumor-immune suppression to stop tumor growth and eventually kill tumor cells. Cancer vaccines are different from conventional vaccines since their therapeutic goals involve triggering tumor antigen-specific cellular immune responses to destroy the tumor cells. Additionally, tumor antigens are endogenous and have limited immunogenicity, unlike conventional vaccinations that use antigens from exogenous infections.

Although the identification and characterization of several tumor antigens have led to the creation of numerous antigen-derived cancer vaccines, many vaccines lack clinical effectiveness because they are insufficiently immunogenic. Therefore, adjuvants are used in vaccination formulations to promote potent and durable immune responses. In this chapter, we summarize the current standard cancer treatment modalities, highlight the present state of cancer immunotherapy, and describe many platforms and optimization techniques for cancer vaccines.

Keywords

Metabolomics